Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs72902419 | chr2:70413352 | C/T | 0 | 175 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72902427 | chr2:70418039 | T/G | 0 | 175 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72902450 | chr2:70427576 | C/T | 0 | 177 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72902451 | chr2:70427588 | T/C | 0 | 177 | 15.37 | 18.43 | 1.03 | KM Plot |
| PAAD | rs72902502 | chr2:70476198 | G/A | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72904332 | chr2:70496220 | C/T | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs72904362 | chr2:70537712 | C/A | 0 | 172 | 15.42 | 17.23 | 1.03 | KM Plot |
| PAAD | rs7294997 | chr12:104668753 | A/G | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs7298613 | chr12:104690163 | T/G | 1.12E-12 | 176 | 1.37 | 15.8 | 15.53 | KM Plot |
| PAAD | rs7303483 | chr12:104726373 | T/C | 1.12E-12 | 176 | 1.37 | 15.8 | 15.53 | KM Plot |
| PAAD | rs73051171 | chr19:33420940 | T/A | 4.22E-5 | 178 | 15.48 | 15.62 | 4.83 | KM Plot |
| PAAD | rs73058640 | chr7:6170983 | G/T | 0 | 177 | 15.47 | 15.5 | 1.03 | KM Plot |
| PAAD | rs73058644 | chr7:6175763 | G/A | 0 | 176 | 15.4 | 15.5 | 1.03 | KM Plot |
| PAAD | rs73058659 | chr7:6194383 | C/T | 0 | 172 | 15.55 | 14.33 | 1.03 | KM Plot |
| PAAD | rs73061617 | chr19:49350984 | G/A | 1.22E-12 | 174 | 16.17 | 12.87 | 1.37 | KM Plot |